Snaphic github
Web2 Mar 2024 · In sum, SnapHiC-G is a powerful tool for characterizing cell-type-specific enhancer-promoter interactions from complex tissues and can facilitate the discovery of chromatin interactions important for gene regulation in biologically relevant cell types. ### Competing Interest Statement Author W.Z. was employed by Merck Sharp & Dohme LLC, … WebIn sum, SnapHiC-G is a powerful tool for characterizing cell-type-specific enhancer-promoter interactions from complex tissues and can facilitate the discovery of chromatin interactions important ...
Snaphic github
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WebHere, we describe Single-Nucleus Analysis Pipeline for Hi-C (SnapHiC), a method that can identify chromatin loops at high res... Cite Download full-text Similar publications Brand new norms for a...
Web1 Sep 2024 · Here, we describe Single-Nucleus Analysis Pipeline for Hi-C (SnapHiC), a method that can identify chromatin loops at high resolution and accuracy from scHi-C … Web5 Aug 2024 · Zhang Y.*, Amaral M.*, Zhu C., Grieco S., Hou X., Lin L., Buchanan J., Tong L., Preissl S.#, Ren B.#, Single-cell epigenome analysis reveals age-associated decay of ...
Web1 Jul 2024 · Since 50–100 cells constitute a reasonable sample size for t-testing, SnapHiC requires a much smaller number of cells. For example, SnapHiC identified the interaction between the promoter of the Sox2 gene and a super-enhancer ~100 kb downstream using as few as 75 mouse embryonic stem cells, whereas the aggregation-based method requires … WebSnapHiC/snap.py. Go to file. Cannot retrieve contributors at this time. 385 lines (374 sloc) 24.7 KB. Raw Blame. import argparse. import os. import sys. from src.bin_reads import …
Web1 Jun 2024 · Our results indicate that SnapHiC could facilitate the analysis of cell type-specific chromatin architecture and gene regulatory programs in complex tissues. View …
WebSnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data Authors: Miao Yu 1 , 6 , Armen Abnousi 2 , Yanxiao Zhang 6 , Guoqiang Li 6 ... Ming Hu 2 show more details PDF Full text Abstract Springer Protocols References Nagano, T. et al. Cell-cycle dynamics of chromosomal organization at single-cell resolution. trackmate racing timing system dragracingWebscipy.stats.PearsonRConstantInputWarning — SciPy v1.8.0 Manual This is documentation for an old release of SciPy (version 1.8.0). Search for this page in the documentation of the latest stable release (version 1.10.0). scipy.stats.PearsonRConstantInputWarning # exception scipy.stats.PearsonRConstantInputWarning(msg=None) [source] # trackmate slot car timer com portWeb13 Dec 2024 · Here, we report single 50 nucleus analysis pipeline for Hi-C (SnapHiC), a new computational framework that fully exploits 51 the power of single cell Hi-C (scHi-C) data to identify chromatin loops at high resolution and 52 accuracy. 53 54 SnapHiC identifies chromatin loops at 10-kilobase (Kb) resolution from scHi-C data by maximizing 55 the … trackmate scoring systemWeb24 Oct 2024 · We present single-cell gene associating domain (scGAD) scores as a dimension reduction and exploratory analysis tool for scHi-C data. scGAD enables summarization at the gene level while accounting ... trackmate slot car timingWebGitHub Copy Ensure you're using the healthiest python packages Snyk scans all the packages in your projects for vulnerabilities and provides automated fix advice Get started free Package Health Score 51 / 100 security Security review needed popularity Limited maintenance Sustainable community Limited Explore Similar Packages pencil trackmate slot timer com portWeb根据新的开发进度包含的任何新软件包或模块来更新requirements.txt文件。 从模块5评估文档中为数据库生成完全满足同一项目的所有要求的ER图和关系图。 trackmate software downloadWeb15 Dec 2024 · Here, we describe SnapHiC, a method that can identify chromatin loops at high resolution and accuracy from scHi-C data. We benchmark SnapHiC against … track material